GIANT: A Cytoscape Plugin for Modular Networks
نویسندگان
چکیده
منابع مشابه
GIANT: A Cytoscape Plugin for Modular Networks
Network analysis provides deep insight into real complex systems. Revealing the link between topological and functional role of network elements can be crucial to understand the mechanisms underlying the system. Here we propose a Cytoscape plugin (GIANT) to perform network clustering and characterize nodes at the light of a modified Guimerà-Amaral cartography. This approach results into a vivid...
متن کاملSimBoolNet—a Cytoscape plugin for dynamic simulation of signaling networks
SUMMARY SimBoolNet is an open source Cytoscape plugin that simulates the dynamics of signaling transduction using Boolean networks. Given a user-specified level of stimulation to signal receptors, SimBoolNet simulates the response of downstream molecules and visualizes with animation and records the dynamic changes of the network. It can be used to generate hypotheses and facilitate experimenta...
متن کاملModClust: a Cytoscape plugin for modularity- based clustering of networks
Large networks such as protein-protein interaction networks are usually extremely difficult to understand as a whole. We developed ModClust, a Cytoscape plugin for modularitybased clustering of large networks. The aim of this plugin is first to establish classes of high density edges. It also allows to understand the relations between these classes, and how they are assembled within the whole g...
متن کاملBiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
UNLABELLED BiNoM (Biological Network Manager) is a new bioinformatics software that significantly facilitates the usage and the analysis of biological networks in standard systems biology formats (SBML, SBGN, BioPAX). BiNoM implements a full-featured BioPAX editor and a method of 'interfaces' for accessing BioPAX content. BiNoM is able to work with huge BioPAX files such as whole pathway databa...
متن کاملBiNoM: a Cytoscape plugin for using and analyzing biological networks
BiNoM (BIological NetwOrk Manager) is a Cytoscape plugin, developed to facilitate the manipulation of biological networks represented in standard systems biology formats and to carry out studies on the network structure. BiNoM provides the user with a complete interface for the analysis of biological networks in Cytoscape environment. BiNoM plugin with documentation, API and source code is avai...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: PLoS ONE
سال: 2014
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0105001